After falling through a time-slip, Yusei Fudo (who has just had his powerful card stolen by a mysterious stranger) meets with Jaden Yuki and Yugi Muto, who agree to help Yusei defeat the evil Paradox, who is planning to destroy Pegasus before he can invent Duel Monsters.

After the conclusion of the Battle City Tournament, deep below the sands of Egypt, an ancient evil has awakened. Anubis, who was defeated centuries ago by Yugi’s mysterious alter ego – the ancient Pharaoh – has returned for revenge. Wielding the power of the Eighth Millennium Item, Anubis is determined to destroy Yugi and take over the world.

Yugi and Kaiba have a special duel that transcends dimensions.